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Showing 12 results for Its

Reza Mir Drikvand, Goodarz Najafian, Mohammad Reza Bihamta, Asa Ebrahimi,
Volume 1, Issue 2 (2-2015)
Abstract

This study was conducted to identify markers associated with some kernel traits in bread wheat in two separate experiments under field and laboratory. One hundred wheat genotypes were evaluated in an alpha lattice experimental design with two replications. Grain hardness, seed length, seed width and thousand kernel weights were measured. Association mapping was performed based on 96 unlinked and 22 SSR QTL linked markers, using structure and Tassel software. Correction for population structure was performed using genome wide SSR markers so that genotypes were divided into six sub-populations. Totally, 35 SSR markers linked to traits were detected eight of them being QTL linked markers and other markers that were linked to traits, were used to investigate population structure. The QTLs linked markers were as follows: Chromosomes 5B, 5D and 6D had three QTL for grain hardness. Nine QTLs were detected on chromosomes 1A, 1B, 2A, 2B, 2D, 5B, 5D, 6D and 7B for kernel length, kernel width and thousand kernel weights. The results of this study demonstrate that association mapping is a useful approach to complement and enhance previous QTL information for marker-assisted selection in wheat.
Reza Darvishzadeh, Mir Javad Mousavi Andazghi, Amir Fayyaz Moghaddam, Hossein Abbassi Holasou, Seyyed Reza Alavi,
Volume 3, Issue 2 (3-2017)
Abstract

In order to evaluate heritability and gene action for some of the important quantitative traits in oriental tobacco, two genotypes, Basma 16-10 and SPT406 were crossed with Basma S. 31 cultivar, separately in 2009-2010. Parents with F1, F2, BC1 and BC2 generations were planted in a randomized complete block design with three replications. Traits such as plant height, leaf length, leaf width, leaf number, internnode number, stem diameter and yield per plant were recorded. The results obtained from analysis of variance indicated that generations mean squares were statistically significant for all traits expect for stem diameter. Therefore, generation mean analysis was performed for significant triats to estimate gene actions using Chi-square and scaling tests. The Chi-square of simple three-parametric model (additive-dominance model) was significant for studied crosses, indicating the presence of non allelic-interactions in the inheritance of these traits in oriental tobacco. Both additive and dominance genetic effects were significant for plant height, leaf length, leaf width, leaf number and internnode number. In addition, presence of high amount of dominance effect and dominance × dominance interactions suggests the importance of non-additive genetic effects for these traits in oriental tobacco. Therefore, selection for these traits in early generations can not be successful. However, additive genetic effects play an important role in the inheritance of yield, and then selection for this trait is hopeful in early generations during tobacco breeding process.
Mohammad Reza Salavati Meybodi, Gholam Ali Ranjbar, Seyed Kamal Kazemitabar, Hamid Najafi Zarrini,
Volume 4, Issue 1 (9-2017)
Abstract

Water stress is one of the most common environmental stresses that limited tobacco production in IRAN. Identification of genetic diversity in tobacco germplasm and genetic relationships between traits help to improve tolerant varieties. In this study, the genetic diversity of 100 flue–cured tobacco (Nicotiana tabacum L.) cultivars was analyzed using 15 morpho-physiological traits and 25 ISSR primers. The cultivars were cultured in a simple lattice design (10×10) with two replications (with and without water stress) in Tirtash Tobacco Institute, Iran. Results showed relative water content (RWC) and cell membrane stability (CMS) in normal condition were significantly higher than stress condition. The estimated broadsense heritability was low for RWC and CMS that represents large environmental effects on these two traits. The results of genotypes clustering by UPGMA method with ISSR markers and by WARD method with morph-physiological traits did not match. Primer UBC814: (CT) 8A with 16 polymorphic bands of the 17 bands, had higher resolution than other primers and seems appropriate for molecular diversity studies in tobacco. The K394 genotype was identified as well as drought tolerant varieties. We can use results of this study for selecting genotypes with great genetic differences and chose the desirable traits and use in breeding programs for producing high heterosis hybrid with tolerance to drought stress in tobacco.
Saeed Khavari Khorasani, Abdonaser Mahdi Poor,
Volume 5, Issue 1 (9-2018)
Abstract

Selection based on proper selection indices can be one of the most effective methods for indirect selection of yield and yield components, simultaneously. In order to determination of selection index for improvement of maize yield, 60 single cross maize hybrids were planted in two separate experiments (drought stress and normal conditions) based on randomized complete block design (RCBD) with three replications in Torogh agricultural station of Khorasan Razavi agricultural and natural resources research and education center, Mashad, Iran in 2013-2014. Morphological and phenological traits, yield and yield components were recorded. Selection indices were calculated based on results of stepwise regression considering to phenotypc, genotypic and economic values. Based on stepwise regression results in normal condition, physiological maturity, plant height, kernel depth, kernel no./row and tassel length totally could explain 60.68 percent of gain yield variation, then these traits were used to calculate selection index. In drought stress condition, kernel no./row, plant height, ear height, 1000 kernel weight, ear length and leaves no. above ear could explain 63.77 percent of grain yield variation that these traits were used to calculate of selection index. We used 5 optimum selection indices (smith-hazel) and one basic selection index as Pesk-Baker to screen the maize genotypes. The results showed that the relative efficiency of selection index based on yield and expected genetic gain for all of measured traits in selection index 2 was higher than others in both normal and drought stress conditions. Based on grain yield and selection indices, 20 percent of the best genotypes were selected by each selection indices. Based on derived results in normal condition, genotype no. 60 (ksc704 commercial hybrid) were selected by all of  selection indices as the best genotype, but in drought stress condition, different genotypes were selected by different selection indices like genotypes 16 (ME77006/1×K1263/1), 22 (ME77006/1×K1263/1) and  34 (ME78005/2× A679), that these genotypes at least were selected by 2 or 3 selection indices.

Mitra Shahbazi, Farhad Nazarian-Firouzabadi, Omid Ali Akbarpour,
Volume 5, Issue 1 (9-2018)
Abstract

Chrysanthemum (Chrysanthemum morifolium) is one of the most important ornamental plants which plays a significant role in the development of gardening industry in the world. The knowledge of genetic diversity is one of the prerequisite criteria for Chrysanthemum breeding with important economic goals. Molecular markers have a significant share in elucidation of inter and intra species genetic diversity. To this end, genetic diversity of a number of Iranian cultivars was molecularly investigated by sequencing a part of rDNA, using ITS4 and ITS5 primers. Genetic distance between Chrysanthemum cultivars ranged from 0.05 to 10.15, demonstrating the power of ITS region in revealing the genetic diversity among cultivars of morifolium, suggesting Iranian cultivars have been genetically improved from morifolium species. Genetic diversity assessment of Iranian Chrysanthemum cultivars demonstrated that presumably inter, intra species or even inter population hybridization may have been involved in creating enormous genetic diversity among Chrysanthemum cultivars.

Seyedeh Zahra Hosseini, Behroz Shiran, Mohammad Ali Ebrahimi,
Volume 5, Issue 2 (3-2019)
Abstract

Phylogenetic relations among 12 wild species of almonds, one cultivated almond and one species of peach were investigated by using of ITS1-5.8S rDNA-ITS2 sequences and trnL region of chloroplast DNA. To do this, maximum-parsimony and neighbor joining analysis adopted. Results of ITS data showed that studied species of Prunus only divided in two groups but incapable to separate different sections. P. tenella showed more diverse genetic distance in compare to other studied species and it seems that this species does not belong to Amygdalus. Also, by using the ITS data it can be reported that Prunus is monophyletic. In this research, the genetic distances for each pair of species were determined and the average genetic distance between species shows only the lowest genetic distance within the genus. Therefore, Prunus is a single genus. Regarding its high similarity of trnL region in wild almond species, it can be reported that maternal ancestor of Prunus is the same and trnL is not optimum marker to separate species of almond.
Roya Zirak, Ali Soleimani, Mehrshad Zeinolabedini, Hamid Hatami Maleki, Azizolah Kheiri,
Volume 5, Issue 2 (3-2019)
Abstract

Genetic diversity among Russian olive genotypes in three different regions of East-Azerbaijan province (includes Tabriz, Maragheh and Malekan) were assessed using morphological and molecular (AFLP) markers. Results of the quantitative and qualitative traits statistics showed a significant genetic variation among studied germplasm and categorized them in five distinguished groups. The most number of genotypes from Maragheh region were in group 1, while, the group 3 consisted of the majority of genotypes from Tabriz region. All genotypes were analyzed with 14 EcoRI-MseI primer combinations. A total of 439 informative and polymorph AFLP markers was generated and analyzed. Based on Jaccard Similarity Index, the minimum genetic similarity was observed between genotype 19 (from Malekan region) and 27 (from Maragheh). The principal coordinate analysis (PCoA) showed the suitable genomic distribution of AFLP markers among individuals. The highest (0.83 %) and lowest (0.33 %) polymorphic information content achieved by primers combination MTTT-EGA and MGT-ETA, respectively. Cluster analysis using molecular data and UPGMA algorithm, classified the studied genotypes in three distinguished groups. The genotypes at the same geographical region did not classify in the same group based on clustering by molecular data. However, this achieved to a large extent when they were classified groups using morphological traits. This result might be explained in terms of convergent evolution and some in part due to asexual propagation of Russian olive from the limited maternal genotypes and distribution across the different geographical regions.
Mahtab Samadi Gorji, Ali Zaman Mirabadi, Kambiz Forozzan, Mostafa Haghpanah,
Volume 5, Issue 2 (3-2019)
Abstract

This experiment was conducted to evaluate genetic diversity in 72 peanut accessions (Arachis hypogaea L.), which introduced from seed bank of Australia in training and seed production research center of oilseeds company, Iran. Twelve major morphological traits recorded during 2013 growing season using a randomized complete block design with three replications. The results showed that the difference between genotypes for all traits was significant. In addition, coefficient of phenotypic variation was greater than coefficient of genotypic variation for all traits, indicating the effect of environment on recorded traits. The broad-sense heritability ranged from 80.25% (for seed width) to 99.54% (for 100 seed weight) and was 96.85% for grain yield. The highest phenotypic and genotypic coefficients of variation obtained for the pod weight, thus, it is possible to improve this trait by selection method and this trait could use as a selection index to improve grain yield. Genetic correlation indicated a high significant correlation between grain yield with grain weight and pod yield. The studied genotypes divided to four groups by cluster analysis based on Ward method.

Ali Akbar Asadi, Mostafa Valizadeh, Seyed Abolghasem Mohammadi, Manochehr Khodarahmi,
Volume 6, Issue 2 (3-2020)
Abstract

Dehydration is the most important limiting factor in agricultural production in arid and semi-arid regions, and water shortages (especially at the reproductive stages) due to lack of precipitation and unequal distribution are inappropriate for limiting the yield. In this research, cross between the Gasspard cultivar (dehydrated susceptible parent) and DN11 line (resistant parent) was performed. F1, F2, F3, BC1 and BC2 generations along with parents, were planted in a randomized complete blocks design with three replications in normal and water deficit conditions for two consecutive years. Physiological traits were measured for single plant samples. Weighted analysis of variance showed that water deficit stress caused significant decrease in flag leaf area and unsignificant decrease in stomatal conductance. Generation mean analysis for Chlorophyll index was accompanied by different results in terms of regression fitted models for each environment, but for stomatal conductance, the results of the generation mean analysis were the same in both environments. In addition to additive and dominant effects, epistatic interaction effects also played role in the inheritance of all studied traits. Most of these effects were double-effects. In flag leaf area, additive, additive × dominant and dominant × dominant effects were involved in inheritance. In water relative content, in addition to these effects, dominant effect was also involved in inheritance. Generations variance analysis showed that the gene action was additive for relative water content, dominant for flag leaf area and over dominant (in both conditions) for stomatal conductance. The gene action for Chlorophyll index under stress and normal conditions were over dominant and additive respectively.

Esmaeil Dasturani, Khalil Zaynali Nezhad, Masood Soltani Najafabadi, Mohammadhadi Pahlevani, Hassan Soltanlo, Saeed Bagherikia,
Volume 8, Issue 1 (8-2021)
Abstract

The aim of this study was to determine the haplotype groups and identify the specific alleles associated with desirable agronomic characteristics in bread wheat. For this purpose, 42 local bread wheat genotypes belong to Iran region and nine commercial cultivars along with Chinese Spring variety (reference genotype) were cultivated in the format of augmented design and evaluated based on their 13 phenotypic traits. The results of descriptive statistics showed that awn length and day to flowering had the highest and lowest phenotypic coefficient of variation, respectively. Eight microsatellite markers were used to investigate the haplotype variation of QTLs associated with phenotypic traits located on wheat chromosomes 4B and 7D. The result showed that the genotypes were classified into 13 and 6 haplotype groups according to the allelic comparison with the reference genotype on chromosome 4B and 7D, respectively. In order to investigate the relationship between traits and markers, analysis of variance was performed based on completely randomized design with unequal numbers of replications for each marker. In general, of the 13 traits studied, there was a statistically significant linkage for eight traits and for the three traits, an allele-specific was introduced simultaneously. If the breeders are interested in genotype selection that simultaneously have three desirable characteristics such as early anthesis, semi-dwarfing and a greater number of grains per spike, they can use an allele-specific (153 bp) of Xgwm149-4B marker.

Saeid Navabpour, Horeyeh Najafi,
Volume 9, Issue 2 (3-2023)
Abstract

Environmental stress is one of the main factors that reduce the growth and performance of crops and threatening human food security. This study was conducted in order to investigate the effect of drought stress on the changes in biochemical traits and the level of expression of a MYB transcription factor gene in two wheat cultivars (Tajan and Zagros), under drought stress. The experiment was conducted as a factorial based on a completely randomized design with 3 replications. Drought treatments were applied at three levels of 40, 70 and 100% of field capacity 4 weeks after germination. Twenty days after the application of stress, leaves and roots were sampled in order to investigate the expression of MYB genes and measuring some biochemical traits. The results of examining the chlorophyll content under stress showed that the content of chlorophyll a and b decreased with increasing of stress intensity in different genotypes. The rate of reduction of chlorophyll a and b in Tajan genotype under severe stress was higher than Zagros genotype. Also, TBARM content under severe drought stress was significantly higher than moderate stress condition and this increase was seen in Tajen genotype more than Zagros genotype. qRT-PCR analysis showed that the MYB genes showed an increase in expression under drought stress. Furthermore, Zagros genotype, which is considered as a tolerant cultivar to drought stress, had a higher MYB expression level than Tajan cultivar for both genes, suggesting this cultivar for future breeding programs, also considering the importance MYB family genes during drought stress, the results can be used in molecular breeding and pyramiding breeding projects.

Maryam Ebrahimi, Reza Darvishzadeh, Amir Fayaz Moghaddam,
Volume 10, Issue 1 (9-2023)
Abstract

Protection of food security is one of the basic priorities of any country, which is achieved through the development and introduction of new, high-yielding and stress-resistant crop varieties. Considering the wide range of usage; human nutrition, livestock and poultry nutrition as well as use in industrial products production, maize is of special importance in agricultural development programs. To improve a trait with complex behavior and low heritability, indirect selection by other traits or a suitable index developed based on several traits can be used. In this research, 86 maize genotypes were cultivated in the form of randomized complete block design with three replications in the field in the Faculty of Agriculture, Urmia University under two normal and salt stress conditions. The measurement of the traits was done from the tassel appearance to kernel physiological maturity. In order to speed up genotype selection and increase the acuracy of selecting high yielding genotypes, four selection indices including Smith- Hazel, Pasek- Baker, Brim and Robinson were used and calculated. The results of present study revealed that selection based on the Smith- Hazel index with the highest selection efficiency (∆H) will increase the grain yield in normal and grain yield and plant height in salt stress conditions. This index, with its high correlation with the breeding value is introduced as a superior index. Based on this index, R59 and 6*/88 genotypes were introduced as the superior genotypes under normal and salt stress conditions, respectively. Nonetheless, these genotypes were recognized as the best genotypes considering the results of all other investigated indices. Identifying and introducing genotypes tolerant to salinity stress is of particular importance due to the expansion of saline lands and the limitation of access to water suitable for irrigation. Based on the above results, 6*/88 genotype is recommended for the development of promising hybrids for cultivation in areas with water or saline soil.


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