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Showing 167 results for Type of Study: Research
Razieh Khadivar, Ahmad Ismaili, Seyed Sajad Sohrabi, Hasan Torabi Podeh,
Volume 9, Issue 2 (3-2023)
Abstract
Drought stress is one of the main environmental factors that affects growth and productivity of crop plants, including lentil. In the course of evolution evolution, crucial genetic regulations mediated by non-coding RNAs (ncRNAs) have emerged in plant in response to drought and other abiotic stresses. In the present study, after identifying lncRNAs within the expression profile of lentil, RNA-seq data and real-time PCR analyses were employed to examine the expression pattern of some of the identified lncRNAs under drought stress. Additionally, psych R package was used to generate the lncRNAs-DEGs co-expression network. A total of 3590 lncRNA sequences were identified in lentils transcriptome. Numerous lncRNAs were co-expressed with genes involved in circadian rhythm regulation, zinc ion response, photosynthetic photoreaction, and ion homeostasis. The LCUL_evgLocus_104392, LCUL_evgLocus_99066 and LCUL_evgLocus_61876 sequences were differentially expressed in response to drought stress. Examining the co-expression of these sequences with differentially expressed genes in response to drought stress, led to the identification of metabolic pathways associated with these sequences. In this study, lncRNA sequences were identified for the first time in lentil, and provided useful insights into the function of lncRNA in plant resistance to drought stress. The lncRNAs-DEGs co-expression network can lead to a better understanding of drought response mechanisms in lentil.
Hossein Abdi, Hadi Alipour, Iraj Bernousi, Jafar Jafarzadeh,
Volume 10, Issue 1 (9-2023)
Abstract
Evaluating the population structure is essential for understanding diversity patterns, choosing proper parents for crossing, accurate identification of genomic regions controlling traits, and evolutionary and kinship relationship studies. In this research, the genetic structure of a wheat population was studied in a panel consisting of 383 Iranian wheat genotypes of hexaploid (cultivars and landraces) and tetraploid species based on distance-based methods (principal component analysis and discriminant analysis of principal component). For this purpose, 16270 single nucleotide polymorphism (SNP) markers obtained by the GBS technique were used. According to the results, almost a quarter of the total variance was belonged to the diversity between populations, and the Fst coefficient between cultivars and landraces was equal to 0.15. In contrast, the above coefficient between tetraploid samples and hexaploid landraces was high and equal to 0.44. Genome D had the lowest value of Fst index and chromosome 4B showed the highest Fst coefficient, and other genetic diversity indices. Although the PCA biplot distinguished hexaploid wheat cultivars from landraces, it was unable to distinctly separate tetraploid genotypes from other genotypes. Accurate evaluation of the population structure with the DAPC method was able to identify and separate the predetermined successfully groups, suggesting that the DAPC approach maximizes the differentiation between groups and minimizes the changes within the group. Partial admixture between cultivars and landraces of hexaploid wheat can be related to gene exchange between these two groups or perhaps their wrong labeling at the time of collection. In general, the results of this study provided valuable information about the genetic differentiation of Iranian tetraploid and hexaploid wheat, which can be used in future wheat breeding programs. Further, protecting these genotypes in gene banks is necessary for different strategies.
Seyedeh Somayeh Mousavi, Omidali Akbarpour, Dr Tahmasb Hosseinpour,
Volume 10, Issue 1 (9-2023)
Abstract
In this research, 15 bread wheat genotypes along with Aftab variety as a control variety were implemented with 4 replications in the form of randomized complete block design for 3 crop years (2016-2019) at Sarab Chengai Station in Khorramabad. The likelihood ratio test (LRT) showed that the genotype-year interaction effect was significant for grain yield. Based on this, singular value analysis (SVD) was performed on the matrix of best linear unbiased predictions (BLUP) of genotype × year interaction to evaluate the stability of genotypes. The scree plot showed that the first principal component accounted for 71.7% and the second principal component accounted for 28.3% of the matrix changes resulting from the best unbiased predictions of the genotype interaction per year. The biplot of the first principal component of the environment against the nominal yield also showed that genotypes No. 9, 12 and 13 had a negligible contribution to the genotype × year interaction and had higher general stability. Also, the biplot of grain yield against the weighted average of absolute scores (WAASB) placed the genotypes in four regions, so that genotypes No. 15, 16, 12, 11, and 10 are in the fourth region due to high stability (low values WAASB) and magnitude of response variable (high performance) were identified as superior genotypes. The WAASBY index (weighted average of WAASB stability and performance) identified genotypes No. 15, 16, 12, 10, 11, 14, 9 and 4 as stable and high yielding genotypes. In general, based on WAASB and WAASBY indices and their comparison, genotypes 15, 16, 12, 11 and 10 were selected as the best genotypes that can be recommended for cultivation in similar climates.
Maryam Ghorbani, Kianoosh Cheghamirza, Saeed Abbasi, Zahra Aziziaram,
Volume 10, Issue 1 (9-2023)
Abstract
The current research was carried out to evaluate genetic diversity of 18 common bean cultivars and promising lines and to determine SSR and SCoT informative markers associated with 14 seed characteristics including the number of seeds per pod, 100 seed weight, seed length, seed width, the contents of crude protein, total soluble sugar, starch content, crude fat, iron, calcium, magnesium, zinc, uronic acid, and mineral ash. The polymorphism information content (PIC) values varied from 0.2 to 0.5 with an average of 0.39 for the SSR markers and from 0.19 to 0.42 with an average of 0.34 for the SCoT markers. The total average resolving power of SSR and SCoT markers were 1.54 and 5.34, respectively, indicating higher efficiency of SCoT markers than SSR markers for the diversity analysis. The common bean studied genotypes were clustered into three distinct groups for both markers based on the Complete Linkage method. Principal coordinate analysis (PCoA) for the SSR markers revealed that the first two principal components justified 59.05% of whole variation. For the SCoT marker, on the other hand, the fraction of variances explained by the first two principal components was equal to 25.43 indicating a better distribution of SCoT markers than SSR markers in the common bean genome. Analysis of molecular variance based on the grouping obtained from cluster analysis showed that the diversity within the group based on SSR and SCoT markers was equal to 89 and 78%, respectively. The results of regression analysis for the studied markers and the bean seed characteristics showed the existence of a significant relationships between a single marker with the several studied traits. This could indicate the association or linkage of the marker locations. Twelve out of 14 of the investigated common bean seed characteristics showed a significant relationship with at least one molecular marker.
Fariba Ranjbar, Babak Abdollahi Mandoulakani, Raheleh Ghasemzadeh,
Volume 10, Issue 1 (9-2023)
Abstract
To evaluate the expression pattern of genes encoding antioxidant enzymes catalase, ascorbate peroxidase and polyphenol oxidase under iron deficiency conditions in Fe- efficient (Pishtaz) and -inefficient (Falat) bread wheat cultivars, a CRD (completely randomized design) based factorial experiment was conducted with three replications. The cultivars were grown under iron deficiency (Less than 1.5 mg Fe/kg soil) and compared with normal conditions (10 mg Fe/kg soil). The relative expression levels of the above-mentioned genes were measured using Real-time PCR technique in the leaves and roots of the cultivars at two growth stages: vegetative (one month after germination) and reproductive (30% of heading). The results revealed a remarkable enhancement in calatalse expression in the roots of both cultivars in the vegetatative stage but it was higher in Fe-efficient cultivar than -inefficient one. The expression of this gene was decreased in leaves at the same stage as well as in the roots of both cultivars in the vegetative stage. The expression level of ascorbate peroxidase gene in the reproductive stage in the roots of Fe-inefficient cultivar was higher than that of -efficient one. In the vegetative stage, the expression of this gene increased in the leaves and roots of Fe-efficient cultivar, but it was decresed in Fe-inefficient cultivar. The relative expression level of polyphenol oxidase gene in the vegetative stage under iron deficiency conditions in the leaf increased almost three times, compared to the roots, while the expression of this gene decreased in the reproductive stage in both leaves and roots. By increasing the expression of both catalase and ascorbate peroxidase genes in the roots of both cultivars in the reproductive stage under iron deficiency conditions, it seems that bread wheat cultivars might reduce the deletrious effects of stress and maintain yield through transferring much iron to the seeds in the seed filling stage. The findings of the present study may increase our understanding of the important role of genes encoding antioxidant enzymes in Fe deficiency stress conditions.
Mohammad Zabet, Fahime Barazandeh, Alireza Samadzadeh,
Volume 10, Issue 1 (9-2023)
Abstract
To investigate the genetic structure of different sesame traits, 7 genotypes, including Ardestan, Sirjan, Fars, Sabzevar, Jiroft, Oltan and TS-3 were studied in the form of a 7 x 7 one-way diallel design in the research farm of the Faculty of Agriculture at University of Birjand during 2015-2018.The traits measured included plant height, height to the first capsule, number of auxiliary branches, number of leaves, leaf length, days to 50 % flowering, days to 90 % flowering, days to physiological maturity, number of capsules per plant, biological yield, grain yield, harvest index, number of seeds per capsule, capsule weight, capsule length, capsule width, chlorophyll a, b and total chlorophyll, oil and protein percentage.Hayman′s variance analysis showed that there were significant components a, b and b3 in all traits and components b1 and b2 in most traits. Parameters D, H1, and H2 were significant and the parameters F, h2 and E were not significant for most traits. The average degree of dominance (√H1/D) showed incomplete dominance and over dominance for all traits. The H2/(4H1) parameter was less than 0.25 in all traits except the day to 50 % flowering, suggesting that increasing and decreasing genes did not have symmetrical distribution among the parents. The parameter (√(4DH1)+F)/√(4DH1)-F ) showed symmetrical and asymmetrical distributions for the studied traits. In most of the traits, there was a dominant gene block controlling the traits. Broad sense and narrow sense heritabilities ranged 0.47-0.99 and 0.17-0.98, respectively. In general, all traits were controlled by genes with additive and dominance effects, so it is possible to select and produce hybrids in sesame. Considering that Fars, Oltan and TS-3 genotypes had the most dominant alleles, it is recommended that in future studies, attention should be paid to these three genotypes.
Mostafa Khodadadi, Behzad Sorkhilalehloo, Seyed Mohammad Mahdi Mortazavian, Jahangir Abbasi Kohpalekani, Mahmoud Bagheri, Milad Karbasi,
Volume 10, Issue 1 (9-2023)
Abstract
Eggplant is a highly nutritious vegetable that is widely consumed. The aim of this study was to evaluate the genetic diversity between eggplant accessions from the National Plant Gene-Bank of Iran. In the first year, a preliminary evaluation was conducted using 168 accessions. Based on preliminary evaluation results, 40 accessions were selected for complementary evaluation in the second year. The evaluation was based on 23 quantitative and qualitative traits. The results of the preliminary evaluation showed statistically significant (P<0.01) differences between accessions for all traits. Fruit shape frequencies were rounded (35.89 percent), elongated (32.18 percent), oval (13.67 percent), Semi-elongated (13.15 percent), and mace-shaped (5.11 percent). In the complementary evaluation, there were significant differences between accessions for all traits. Qualitative traits such as flower color (1.56) and fruit shape (1.53) exhibited the highest genetic variation, while fruit color (0.5) showed the lowest. Cluster analysis analysis results revealed four groups for accessions and the highest (22.34) and least (0.12) genetic distances between 1 and 2 and between 7 and 21accessions, respectively. Factor analysis showed that the first three factors explained 68.06 percent of total variation in data. The first and second factors were related to yield and yield components, respectively. Also, fruit yield traits showed high heritability and there was significant genetic correlation between these traits. Therefore, high heritable and high-scoring traits in these factors should be considered when selecting progenies in segregating populations for improvement in terms of fruit yield and shape.
Mozhgan Shirinpour, Ehsan Atazadeh, Ahmad Bybordi, Saeid Aharizad, Ali Asghari, Ashkboos Amini,
Volume 10, Issue 1 (9-2023)
Abstract
Considering the importance of maize production and the impact of water deficit stress on reducing the yield of maize, estimating the genetic components and heritability of traits for determine the breeding method under water deficit stress is essential in breeding programs. The generations drived from a cross between two inbred lines of maize including B73 (maternal line) and MO17 (paternal line), SC704 (F1) as well as F2, BC1, BC2 and F3 generations in order to estimate the genetic effects and heritability of yield, yield components and morphological traits were studied. Seven maize generations using the generations mean analysis under the full irrigation, mild and severe water deficit conditions were evaluated. The experiment was conducted in the form of randomized complete block design with 20 replications per experimental unit during two cropping seasons (2018-2019) at the Agricultural Research Station of University of Tabriz. The results of two-year combined analysis of variance and mean comparisons under three different irrigation regimes showed that water deficit stress significantly reduced all of the studied traits (except root/shoot ratio). The generations mean analysis showed the high contribution of non-additive gene effects for the genetic control of grain yield, ear diameter, number of kernel row, ear weight (in full irrigation conditions), 100 grain weight, plant height, fresh shoot weight and biological yield traits. According to these results, selection in the advanced generations and the breeding method based on hybridization can be effective to improve these traits. Also, the significant contribution of additive gene effects in controlling the inheritance of ear length, ear weight (in both stress conditions) and root/shoot ratio traits indicated that selection in early segregating generations and inbred parents can be effective for breeding of these traits and taking advantage of additive variance. Hybrid SC704 and inbred MO17 compared with the inbred B73 showed the lowest variation percentage under the water deficit stress conditions, which indicated their high yield potential and stability in the stress conditions.
Zahra Zarindast , Farhad Nazarian-Firouzabadi, Mitra Khademi,
Volume 10, Issue 1 (9-2023)
Abstract
Expression of antimicrobial peptides (AMPs) in plants to resist plant pathogens as well as to produce novel AMPs for pharmaceutical applications has recently received much consideration. alfAFP, a defensin cationic peptide synthesizing in alfalfa seeds, exhibits a strong antimicrobial activity. In order to facilitate alfAFP access to the pathogen’s membrane and increase the activity of the alfAFP peptide, the alfAFP encoding sequence was fused to the C-terminal of a chitin-binding domain (CBD) from a rice chitinase encoding gene. First, the antimicrobial properties of the recombinant peptide were assessed using bioinformatics tools. Next, the pGSA1285 expression vector harboring the CBD-alfAFP heterologous DNA was transformed into Agrobacterium rhizogenes for hairy root (HR) production in tobacco. The presence of transgene, transcription, and the expression of recombinant peptide in the HRs were confirmed by PCR and semi-quantitative RT-PCR analysis, respectively. Bioinformatic analysis was used to predict the antimicrobial activity of the alfAFP recombinant peptide. The results of the 3D structure analysis revealed a β-sheet and an α-helix structure that corresponded well with the structure of plant defensins. A Knottin functional domain was also recognized, suggesting that the recombinant peptide retains its antimicrobial activity. The results of the in vitro antimicrobial activity of the alfAFP recombinant peptide using CFU test showed that the recombinant peptide had significant inhibitory effects on Pseudomonas syringae pathogen. Therefore, the chitin-binding domain provided a better access of the recombinant peptide to the pathogenic bacterial cell wall through binding to peptidoglycan, and probably the recombinant peptide was able to target the plasma membrane with better efficiency. The results of this study suggested that the expression of the CBD-alfAFP recombinant peptide in crop plants and HRs can be a promising approach to producing pathogen-resistant plants as well as to produce new recombinant pharmaceutical AMPs.
Fatemeh Derikvand, Eidi Bazgir, Mostafa Darvishnia, Hossein Mirzaei Najafgholi,
Volume 10, Issue 1 (9-2023)
Abstract
Apple is one of the most important economic products of Iran and the world. Apple brown rot disease (Monilinia laxa) is one of the important diseases that causes yield loss in pre-harvest and post-harvest stages. In this research, the amount of changes in some defense compounds of apple fruit, including peroxidase and catalase enzymes, following inoculation with M. laxa was assessed. Extraction and measurement of peroxidase and catalase enzymes were done at 0, 3, 6, 9 and 12 days post inoculation with M. laxa. Also, in this study, the changes in the expression of PR1 and PR8 genes in response to brown rot disease in apple fruit was recorded at 12, 24, 48 and 96 hours along with controls. The results of the analysis of variance of resistance genes expression at different time points were significant. After 48 hours, the expression of PR1 and PR8 genes was observed to be the highest compared to the control. The expression of PR1 and PR8 genes was observed to be 3 and 8 times that of the control, respectively. In this research, the expression of PR1 and R8 genes was assessed for the first time following M. laxa inoculation in apples. Results of the present study showed that reseistance genes as well as the antioxidant enzymes can help to improve resistance against apple brown rot disease as an important storage pathogens for long-term storage.
Maryam Ebrahimi, Reza Darvishzadeh, Amir Fayaz Moghaddam,
Volume 10, Issue 1 (9-2023)
Abstract
Protection of food security is one of the basic priorities of any country, which is achieved through the development and introduction of new, high-yielding and stress-resistant crop varieties. Considering the wide range of usage; human nutrition, livestock and poultry nutrition as well as use in industrial products production, maize is of special importance in agricultural development programs. To improve a trait with complex behavior and low heritability, indirect selection by other traits or a suitable index developed based on several traits can be used. In this research, 86 maize genotypes were cultivated in the form of randomized complete block design with three replications in the field in the Faculty of Agriculture, Urmia University under two normal and salt stress conditions. The measurement of the traits was done from the tassel appearance to kernel physiological maturity. In order to speed up genotype selection and increase the acuracy of selecting high yielding genotypes, four selection indices including Smith- Hazel, Pasek- Baker, Brim and Robinson were used and calculated. The results of present study revealed that selection based on the Smith- Hazel index with the highest selection efficiency (∆H) will increase the grain yield in normal and grain yield and plant height in salt stress conditions. This index, with its high correlation with the breeding value is introduced as a superior index. Based on this index, R59 and 6*/88 genotypes were introduced as the superior genotypes under normal and salt stress conditions, respectively. Nonetheless, these genotypes were recognized as the best genotypes considering the results of all other investigated indices. Identifying and introducing genotypes tolerant to salinity stress is of particular importance due to the expansion of saline lands and the limitation of access to water suitable for irrigation. Based on the above results, 6*/88 genotype is recommended for the development of promising hybrids for cultivation in areas with water or saline soil.
Elham Azizi, Najmeh Salehan, Raheleh Rahbarian, Ali Masoomi,
Volume 10, Issue 2 (2-2024)
Abstract
Purslane (Portulaca oleracea) is a common widely utilized medicinal plant, especially in tropical regions. To explore the cytogenetic characteristics of purslane, an experiment was conducted on five landraces of purslane, including Qom, Khoy, Kalat, Yazd and Gachsaran in Payame Noor University of Mashhad, Iran. The results showed that in all five landraces, the basic chromosomes number was x=9; two landraces (Qom and Yazd) were tetraploid (2n=4x=36) and three landraces (Gachsaran, Khoy and Kalat) were diploid (2n=2x=18). Chromosome type was meta-centric and sub-meta-centric. The landraces of Khoy and Yazd had the longest and the shortest chromosomes respectively. In all landrace, the short arm size ranged from 5.93 µm to 8.07 µm and the long arm size ranged from 9.21 µm to 10.04 µm. According to the Stebbins' Table, landrace of Qom was the member of class 1B and others were members of class 1A. This represents a similar and primary evolutionary situation between landraces. In the clustering of different landraces in terms of karyotypic traits, Khoy and Kalat landraces were placed in one cluster and each of Gachsaran, Yazd and Qom landraces were placed in separate branches. PCA showed that the first three traits as Length of Long arm, Length of short arm and Length of total chromosome explained more than 97% of the total variation among the landraces. In general, considering the medicinal properties and wide distribution of purslane, determining the ploidy level and chromosomal study of different landraces of this plant can be effective in breeding and increasing its quantitative and qualitative production.
Hamideh Javadi, Parvin Salehi Shanjani,
Volume 10, Issue 2 (2-2024)
Abstract
German chamomile, Matricaria recutita L., is a medicinal plant of Asteraceae family, which is known as the "star" among medicinal species and its use dates back to the time of the Egyptian pharaohs. In this study, four populations of M. recutita that were collected from different parts of Iran, were studied for chromosome and karyotypic characteristics. Squash method with Hematoxylin staining was used to prepare microscopic slides. Microscopic observations showed the number of somatic chromosomes was 2n=18 for all populations. The length (TL, LA and SA) and symmetry karyotype (AR, CI, TF%, DRL, SC, LA% and SA%), as well inter and intra chromosome asymmetry (A1 and A2) were calculated. Karyotypic formula analysis showed the predominance of metacentric chromosomes in all populations. Based on mean of measured traits, the longest chromosome and genome belonged to population 15123 (Arak). According to Stebbins classification, populations were categorized in two groups. Karyotype symmetry factors showed that two populations 15123 (Arak) and 8959 (Borujen) had asymmetric and symmetric karyotypes, respectively. In PCA, the first three components could explain the entire diversity of populations. The most diversity of populations was for chromosome length traits. According to Ward's clustering method, the populations were placed in three groups at a genetic distance of 2.32. In general, the existence of high genetic and cytogenetic diversity indicates the existence of high potential in the improvement of Matricaria genus and cross-breeding activities. The data obtained from this research are used in the future breeding programs of Matricaria L.
Seyede Maryam Seyed Seyed Hassan Pour, Leila Nejadsadeghi, Zahra Sadat Shobbar, Danial Kahrizi,
Volume 10, Issue 2 (2-2024)
Abstract
Camelina )Camelina sativa (is an annual, self-pollinating, allohexaploid plant with diploid inheritance belonging to the Brassicaceae family. Camelina exhibits a remarkable degree of similarity to the model plant Arabidopsis thaliana. WRKY transcription factors are among important gene families in plants that play crucial roles in regulating growth and development and in response to diverse stresses. In this research, using bioinformatics analysis and databases, members of the WRKY gene family were identified and their various characteristics were investigated. Overall, the genome of the Camelina plant was found to harbor 214 members of the WRKY gene family. All 214 WRKY genes were found to possess the conserved WRKY functional domain, along with a variety of motifs within their structural composition. Phylogenetic analysis divided the identified members of Camelina WRKY genes into four main groups. Examination of the chromosomal positions revealed that the 214 identified WRKY genes exhibited an uneven distribution across the chromosomes. In order to validate the identified genes, the expression of two genes (Csa11g065620 and Csa07g035970) orthologs of two genes involved in drought stress in Arabidopsis (WRKY8 and WRKY57), were investigated in a drought tolerant (DH 91) and a drought sensitive (DH 101) lines. The results of the gene expression analysis showed that both genes had high expression in drought stress conditions in tolerant line in comparison to normal conditions, whereas no significant expression was found in drought sensitive line. The findings of the present study offer valuable insights for evolutionary investigations and enhance our understanding of the functional roles of the WRKY gene family in Camelina, thereby laying a foundation for future research endeavors in this field.
Ramezanali Pourali, Mohammadhadi Pahlevani, Khalil Zeinalnejad,
Volume 10, Issue 2 (2-2024)
Abstract
Increasing grain yield and improving the quality of bread are among the most important goals of wheat breeding programs in Iran. Understanding the genetic control of traits and finding molecular or morphological markers associated with them are also prerequisites for any genetic engineering program. In this study, 100 progenies of a 10 × 10 diallel cross were used to analyse the genetics of grain yield and bakery values using STS markers associated with HMWG subunits. This research was carried out during 2018 and 2019 cropping season at Gorgan University of Agricultural Sciences and Natural Resources experimental fields. In the first year, 10 wheat cultivars, including Gonbad, Morvarid, Kalate, Ehsan, Sirvan, Baharan, Chamran2, Shush, Mehrgan and Brat collected from different geographical regions of Iran were planted and crossed in the field. In the second year, the parents and crosses were planted in the form of a randomized complete block design with three replications. The grain yield, number of spikes per plant, number of seeds per spike, seed weight, days to emergence and plant height were recorded. The results of this study indicated significant genetic differences between the parents. Narrow-sense heritability analysis revealed that the crossing of cultivars is the best breeding method to enhance seed yield, number of spikes per plant and days to emergence. Also, to improve the number of seeds per spike, seed weight and plant height, classical breeding methods may offer higher efficiency. Marvarid and Gonbad were ranked 1st and 2nd, respectively with respect to general combining abilities for grain yield, attributed to their positive and significant general combining ability effects. The highest specific combining ability was observed for Ehsan×Gonbad, Marvarid×Chamran 2 and Shush×Sirvan crosses. The results of molecular markers analysis showed that the STS markers were able to identify the difference in the baking value of cultivars. The quality score of the cultivars ranged 6 and 10 and to this end, Kalate and Brat were the top cultivars. Therefore, due to superiority in terms of both quantity and quality for yield, these cultivars can be used as parents with desirable genes for future breeding programs. Overall, the STS markers employed in this study proved to be valuable markers for enhancing the genetic background of bread wheat, particularly when employing marker-assisted selection for bakery value.
Seyedeh Sanaz Ramezanpour, Hassan Soltanloo, Saied Navabpour,
Volume 10, Issue 2 (2-2024)
Abstract
To evaluate the effect of fungus Blumeria graminis (powdery mildew disease) on expression of genes associated with resistance reactions in barley, a susceptible cultivar (Afzal), a semi-susceptible genotype (Line 67) and a resistant genotype (Line 104) were selected. Following inoculation with Blumeria graminis at seedling stage, sampling was performed at different time points (0-10 days). Changes in gene expression levels were measured by qRT-PCR analysis. Analysis of molecular data showed that the genes encoding chitinase and glucanase as the key enzymes in fungal cell wall degradation, had higher expression levels in the resistant genotype (Line 104). The transcript level of chitinase in semi-susceptible genotype (Line 67) was lower than that of the resistant genotype (Line 104) and higher than that of the susceptible cultivar. Most transcripts of chitinase gene were seen at 12 hours post inoculation in the resistant genotype (Line 104), whereas the lowest expression level was recorded at the same time in the susceptible cultivar. The expression levels of the other two genes (glucanase and peroxidase) were higher in the resistant genotype (Line 104) than those in the susceptible cultivar. Increasing in MAPK transcripts in resistant genotype (Line 104) and its depletion in susceptible cultivar confirmed MAPK role in Hypersensitive response (HR) and defense responses of barley infected with powdery mildew disease. Based on the findings of this study, it appears that the HR in the resistant genotype initiated as early as six hours post inoculation, effectively hindering the penetration and dissemination of the pathogen within the plant. Such reaction was not observed in the semi-susceptible and susceptible barley plants, possibly due to delayed in responses, allowing the pathogen ample time to penetrate and propagate within the host plant. The results of this research can be used to evaluate the resistance level of cultivars and also to evaluate the resistance in the seedling stage of promising lines.
Mohammad Nader Ebrahimi, Hadi Ahmadi, Mostafa Darvishnia, Daryoush Ghoudarzi,
Volume 10, Issue 2 (2-2024)
Abstract
Hexaploid winter wheat (Triticum aestivum L., 2n= 6x= 42, AABBDD) is an important small-grain cereal crop grown for food and feed. In Iran, wheat is the most cultivated cereal crop where winter wheat is ranked 1st in terms of production. Wheat fusarium head blight (FHB) is one of the most important diseases of wheat in humid and hot regions of the world, which causes a decrease in yield and grain quality. Fusarium head blight is caused by Fusarium graminearum. In order to investigate the resistance of some wheat traits against HBF, 27 varieties and lines of bread wheat were sown at the farm of Faculty of Agriculture, Lorestan University. The spikes were infected at the first flowering stage by spray inoculation. The results showed that there was a great diversity among the 27 varieties of bread wheat tested in terms of growth traits, yield components, and grain yield. The results of The Duncan's test for comparing means showed that cultivars Ghods, Shiraz, Morvarid 2, and Pishtaz had a significant superiority in terms of grain yield compared to other cultivars. The results of simple correlation and also stepwise regression analysis showed that the traits of 1000 seed weight, plant height, number of seeds per spike, number of spikes, spike length and plant height are very important traits for grain yield. According to values of broad sense heritability and genetic gain for plant height and high correlation of this trait and seed yield, plant height can be used as a suitable trait for improving seed yield by selection. The overall results showed that Shiraz, Pishtaz, Quds and Morwarid-2 cultivars are suitable for transferring resistance to wheat spike blight disease in breeding programs.
Hosein Astaraki, Mahmoud Lotfi, Sasan Aliniaeifard, Ali Izadi-Darbandi, Payman Sharifi, Hossein Ramshini,
Volume 10, Issue 2 (2-2024)
Abstract
In order to select the most tolerant genotypes of melon to drought stress, 30 landraces and cultivars were evaluated at Broujerd Agricultural Research Station in 2018. Under normal and drought stress conditions genotypes were evaluated in a randomized complete block design with three replications. Drought stress was started when fruits appeared. Based on the rate of evaporation in class A evaporation pan (normal conditions: 50 mm, stress conditions: 100 mm), irrigation was carried out. The results of this study showed that Yield under drought stress and normal conditions showed high correlations with stress tolerance indices such as MP (Mean Productivity), GMP (Geometric Mean Productivity) and STI (Suitability Tolerance Index). The broad sense hereditary under drought stress condition varied from 81% for yield per plant to 97% for the fruit lenght. Under drought stress condition, the highest percentage of genetic coefficient of variation (GCV) was observed for Weight of flesh and skin (49 percent) and the lowest for days to maturity (4 percent). Based on the PCA biplot, the genotypes of Mamaghani, Rish-baba, Garmak and Japuni melon were identified as tolerant and Mazandrani, Uzbak1 and Ginsen Makuwa were classified as sensitive to drought stress. These results could be useful for breeding purposes and the genotypes can be crossed with each other to produce segregating populations and selection of the best plants.
Maryam Ehsasatvatan, Bahram Baghban Kohnehrouz,
Volume 10, Issue 2 (2-2024)
Abstract
The global prevalence of type 2 diabetes mellitus is continuously increasing, and there is currently no definitive cure for type 2 diabetes. The potent glucagon-like peptide 1 (GLP-1), a natural small incretin hormone, enhances insulin secretion in a glucose-dependent manner. However, the exceedingly short half-life of GLP-1 limits its therapeutic applications. Albumin-binding DARPin can be used to increase the serum half-lives of therapeutic proteins, peptides, and small compounds. In this study, a long-acting GLP-1 agonist with oral delivery potential containing a protease-resistant GLP-1, an albumin-binding DARPin, and Penetratin as a fusion protein was expressed in a bioencapsulated form within tobacco chloroplasts to confer digestive system protection in plant cells. The successful transformation of tobacco chloroplasts with trivalent fusion protein-coding genes was conducted using a pPRV111A chloroplastic expression vector and a gene gun. Homoplasmic transplastomic plants were obtained after three rounds of selection in selection medium containing 500 mg/L spectinomycin and streptomycin. Transgene integration and homoplasmic status in the transplastomic plants were confirmed by PCR and Southern blot analyses. Western blot analysis confirmed the accumulation of the mGLP1-DARPin-Pen fusion protein in the chloroplasts of the transplastomic plants. The fusion protein content estimated by ELISA was 21.8% of the total soluble protein content in the transplastomic plants. The successful expression of the designed fusion protein indicated that the production of functional GLP-1 in plants may facilitate the development of a low-cost, orally deliverable form of this protein for the treatment of type 2 diabetes.
Forough Joudaki, Ahmad Ismaili, Seyed Sajad Sohrabi, Seyedeh Zahra Hosseini, Hadi Ahmadi,
Volume 10, Issue 2 (2-2024)
Abstract
Gall oak (Quercus infectoria) is one of the extraordinary tree species with functional medicinal properties within the oak family. Various studies have confirmed the presence of numerous secondary metabolites with therapeutic properties in this plant. Despite the significance of gall oak, its genetic structure remains elusive. Therefore, unraveling the genetic structure of gall ok may provide valuable insights into its potential applications across diverse industries. MicroRNAs emerge as pivotal genetic elements implicated in the biosynthesis of crucial metabolites across a wide range of different plant species. Despite the significant role of miRNAs in plants, as of yet, no miRNAs have been reported in Q. infectoria.. Therefore, in the present study, after assembling the transcriptome of Q. infectoria, the conserved microRNAs were identified. Leaf and root samples of Q. infectoria were collected from trees in the Shineh region, and 2-year-old seedlings were grown from mature oaks in Khorramabad (Lorestan Province, Iran). Total RNA was extracted from roots and leaves using the Djami-Tchatchou method. After sequencing by the Illumina HiSeq 2500 platform and checking the quality of all the generated reads, the adapter sequences were removed, and the high-quality reads were assembled using Trinity package. To identify miRNAs and their target genes, all plant miRNAs sequences were downloaded from the miRbase database. The BLASTn algorithm was employed to identify the highest similarity between unigenes and mature plant miRNAs. Furthermore, BLASTx was used to search against the non-redundant proteins (NR) database to remove protein-coding unigenes. The investigation of miRNA second-structure prediction involved assessing the similarity between potential unigenes and mature miRNA sequences using the mfold web tool. Identification of miRNA target genes and gene ontology (GO) was performed using the psRNAtarget web-tool and OmicsBox software, respectively. Following a range of strict filtering criteria, four miRNAs belonging to conserved miRNAs families were identified, including qin-miR156, qin-miR399, qin-miR160, and qin-miR172. KEGG pathway analysis showed the target genes were involved in the citrate cycle pathway. Examining miRNA target genes in Q. infectoria and analyzing their interaction network, finally led to the identification of three hub genes. Identified miRNA target genes were associated with the biosynthesis of various enzyme groups, suggesting that most of miRNAs regulating hydrolases, transferases, and oxidoreductases. Given the role of microRNAs in regulating transcription factors and their impact on genes involved in secondary metabolite biosynthesis, future breeding programs in Q. infectoria may benefit from the potential of such regulatory elements as a guide and key.
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