[Home ] [Archive]   [ فارسی ]  
:: About :: Main :: Current Issue :: Archive :: Search :: Submit :: Contact ::
Main Menu
Home::
Journal Information::
Articles archive::
For Authors::
For Reviewers::
Registration::
Contact us::
Site Facilities::
::
Search in website

Advanced Search
..
Receive site information
Enter your Email in the following box to receive the site news and information.
..



 
..
:: Volume 7, Issue 2 (2021) ::
pgr 2021, 7(2): 163-180 Back to browse issues page
Evaluation the Mean Performance and Stability of Rice Genotypes by Combining Features of AMMI and BLUP Techniques and Selection Based on Multiple Traits
Peyman Sharifi * , Abouzar Abbasian , Ali Mohaddesi
Department of Agronomy and Plant Breeding, Rasht Branch, Islamic Azad University, Rasht, Iran , sharifi@iaurasht.ac.ir
Abstract:   (9297 Views)
Additive main effect and multiplicative interaction (AMMI) and best linear unbiased prediction (BLUP) are two methods for analyzing multi-environment trials (MET). In this study, seven selected rice lines were evaluated along with two check varieties based on randomized complete block design in Tonekabon, Amol and Sari (Iran) in three growing seasons of 2011-14. To quantify the genotypic stability, the best linear unbiased predictions of the genotype by environment interactions (GEI) were estimated, and singular value decomposition (SVD), which is the basis of AMMI analysis, was performed on the resulting matrix. The likelihood ratio test (LRT) showed that the effect of GEI was significant on grain yield, number of tillers, thousand grains weight and panicle length. Therefore, due to the significant interaction of genotype by environment, BLUP analysis can be performed on this data. The biplot of first principal component (PC1) of the environment versus nominal yield showed that genotypes 7 ([IR 67015-22-6-2-(A37632) × (Amol3 × Ramzanalitarom)]39), 6 (IR67015-22-6-2-(A37632) × (Amol3 × Ramzanalitarom)]126) and 2 ([IR64669-153-2-3 - (A8948) × (4Surinam Deylamani)]2), due to the lowest scores of the PC1, had a small share in the GEI and had more grain yield stability. The biplot of grain yield versus WAASB, placed genotypes in four regions, so that genotypes in the fourth region, including genotypes 6, 7, 8 (Line 843, check variety), and 9 (Shirodi, check variety), were due to large value of response variable (high grain yield) and high stability (low values of WAASB) were very productive and had extensive stability. Identification of genotypes with weighted average of WAASB and response variable (WAASBY) criteria showed that genotypes 6 and 7 were high yields and stable. Based on the multi-trait stability index (MTSI), G6 was also selected as the best genotype in terms of grain yield, evaluated traits and stability of each trait. Totally, genotype 6 was stable and superior based on the results of all methods.
Keywords: Compatibility, Multi-trait stability index (MTSI), Simultaneous selection, WAASB
Full-Text [PDF 695 kb]   (2074 Downloads)    
Type of Study: Research | Subject: Plant improvement
References
1. Ahmadi, K., Ebadzadeh H.R., Hatami, F., Abdshah, H. and Kazemian, A. (2019). Agricultural Statistics of 2017-18 Growing Year. Volume One: Crop Products. Ministry of Jihad Agriculture, Deputy of Planning and Economy, Information and Communication Technology Center, IR (In Persian).
2. Akter, A., Jamil Hassan, M., Umma Kulsum, M., Islam, M.R., Hossain, K. and Mamunur Rahman, M. (2014). AMMI biplot analysis for stability of grain yield in hybrid rice (Oryza sativa L.). Journal of Rice Research, 2(2): 126-138.
3. Balestre, M., Von Pinho, R.G., Souza, J.C. and Oliveira, R.L. (2009). Genotypic stability and adaptability in tropical maize based on AMMI and GGE biplot analysis. Genetic Moleular Research, 8(4): 1311-1322.
4. Bocianowski, J., Niemann, J. and Nowosad, K. (2019). Genotype-byenvironment interaction for seed quality traits in interspecific cross-derived Brassica lines using additive main effects and multiplicative interaction model. Euphytica, 215(7): 1-13.
5. Bornhofen, E., Benin, G., Storck, L., Woyann, L.G., Duarte, T., Stoco, M.G. and Marchioro, S.V. (2017). Statistical methods to study adaptability and stability of wheat genotypes. Bragantia, 76(1): 1-10.
6. Bose, L.K., Jambhulkar, N.N., Pande, K. and Singh, O.N. (2014a). Use of AMMI and other stability statistics in the simultaneous selection of rice genotypes for yield and stability under direct-seeded conditions. Chilean Journal of Agricultural Research, 74(1): 1-7.
7. Bose, L.K., Jambhulkar, N.N. and Singh, O.N. (2014b). Additive main effects and multiplicative interaction (AMMI) analysis of grain yield stability in early duration rice. Journal of Animal and Plant Science, 24(6): 1885-1897.
8. Donoso-Ñanculao, G., Paredes, M., Becerra, V., Arrepol, C. and Balzarini, M. (2016). GGE biplot analysis of multi-environment yield trials of rice produced in a temperate climate. Chilean Journal of Agricultural Research, 76(2): 152-157.
9. Gauch, H.G. (1988). Model selection and validation for yield trials with interaction. Biometrics, 44(3): 705-715.
10. Gauch, H.G. and Zobel, R.W. (1988). Predictive and postdictive success of statistical analyses of yield trials. Theoretical and Applied Genetis, 76(1): 1-10.
11. Gauch, H.G. and Zobel, R.W. (1997). Identifying mega-environments and targeting genotypes. Crop Science, 37(1): 311-326.
12. Kempton, R.A. (1984). The use of biplots in interpreting variety by environment interactions. Journal of Agricultural Science, 103(1): 123-135.
13. Mohaddesi, A., Erfani, R., Sharifi, P., Aminpanah, H. and Abbasian, A. (2017). Studying the relationships between yield and yield components and stability of some of rice genotypes using biplot method. Cereal Research, 6(4): 411-421 (In Persian)
14. Nardino, M., Baretta, D., Carvalho, I.R., Olivoto, T., Follmann, D.N., Vincius, J.S., Ferrari, M., de Pelegrin, A.J., Konflanz, V.A. and de Souza, V.Q. (2016). Restricted maximum likelihood/best linear unbiased prediction (REML/BLUP) for analyzing the agronomic performance of corn. African Journal of Agricultural Research, 11(48): 4864-4872.
15. Olivoto, T., Lúcio, A.D.C., da Silva, J.A.G., Sari, B.G. and Diel, M.I. (2019a). Mean performance and stability in multi-environment trials II: selection based on multiple traits. Agronomy Journal, 111(6): 2961-2969.
16. Olivoto, T., Lúcio, A.D.C., da Silva, J.A.G., Marchioro, V.S., de Souza, V.Q. and Jost, E. (2019b). Mean performance and stability in multi-environment trials I: combining features of AMMI and BLUP techniques. Agronomy Journal, 111(6): 2949-2960.
17. Olivoto, T. and Lúcio, A.D.C. (2020). Metan: An R package for multi-environment trial analysis. Methods in Ecology and Evolution, 11: 783-789.
18. Olivoto, T., Nardino, M., Carvalho, I.R., Follmann, D.N., Ferrari, M., Szareski, V.J., de Pelegrin, A.J. and de Souza, V.Q. (2017). REML/BLUP and sequential path analysis in estimating genotypic values and interrelationships among simple maize grain yield-related traits. Genetics and Molecular Research, 16(1): 1-19.
19. Rahayu, S. (2020). Yield stability analysis of rice mutant lines using AMMI Method. IOP Conf. Series: Journal of Physics: Conference Series, 1436(1): 1-9.
20. Rocha, J.R.d.A.S.d.C., Machado, J.C. and Carneiro, P.C.S. (2018). Multitrait index based on factor analysis and ideotype-design: Proposal and application on elephant grass breeding for bioenergy. Global Change Biology and Bioenergy, 10(1): 52-60.
21. Sadimantara, G.R., Kadidaa B., Suaib, L. and Safuan, O. (2018). Growth performance and yield stability of selected local upland rice genotypes in Buton Utara of Southeast Sulawesi. IOP Conference Series: Earth and Environment Science, 122(1): 1-7.
22. Samonte, S.O.P., Wilson, L.T., McClung, A.M. and Medley, J.C. (2005). Targeting cultivars onto rice growing environments using AMMI and SREG GGE biplot analyses. Crop Science, 45(6): 2414-2424.
23. Sharifi, P. (2020a). Application of Multivariate Analysis Methods in Agriculural Sciences. Rasht Branch, Islamic Azad University Press, IR (In Persian).
24. Sharifi, P. (2020b). Evolution, Domesicatin, Breeding Methods and the Latest Breeding Findings in Rice. Agricultural and Natural Resources Engineering Organization of IRAN, IR (In Persian).
25. Sharifi, P., Aminpanah, H., Erfani, R., Mohaddesi, A. and Abbasian, A. (2017). Evaluation of Genotype×Environment Interaction in Rice Based on AMMI model in Iran. Rice Science, 24(3): 173-180.
26. Sharifi, P. and Aminpanah, H. (2016). Evaluation of genotype × environment interactions, stability and a number of genetic parameters in rice genotypes. Plant Genetic Researches, 3(2): 25-42 (In Persian).
27. Smith, A.B., Cullis, B.R. and Thompson, R. (2005). The analysis of crop cultivar breeding and evaluation trials: An overview of current mixed model approaches. Journal of Agriculture Science, 143(1): 449-462.
28. Ullman, J.B. (2006). Structural equation modeling: Reviewing the basics and moving forward. Journal of Personality Assessment, 87: 35-50.
29. Van Eeuwijk, F.A., Bustos-Korts, D.V. and Malosetti, M. (2016). What should students in plant breeding know about the statistical aspects of genotype × environment interactions? Crop Science, 56(5): 2119-2140.
30. Veenstra, L.D., Santantonio, N., Jannink, J.L. and Sorrells, M.E. (2019). Influence of genotype and environment on wheat grain fructan content. Crop Science, 59(5): 190-198.
31. Yan, W., Hunt, L.A., Sheng, Q. and Szlavnics, Z. (2000). Cultivar evaluation and mega-environment investigation based on the GGE biplot. Crop Science, 40: 597-605.
Send email to the article author



XML   Persian Abstract   Print


Download citation:
BibTeX | RIS | EndNote | Medlars | ProCite | Reference Manager | RefWorks
Send citation to:

Sharifi P, Abbasian A, Mohaddesi A. Evaluation the Mean Performance and Stability of Rice Genotypes by Combining Features of AMMI and BLUP Techniques and Selection Based on Multiple Traits. pgr 2021; 7 (2) :163-180
URL: http://pgr.lu.ac.ir/article-1-200-en.html


Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Volume 7, Issue 2 (2021) Back to browse issues page
پژوهش های ژنتیک گیاهی Plant Genetic Researches
Persian site map - English site map - Created in 0.06 seconds with 38 queries by YEKTAWEB 4657